FIXME: home page introduction
Prerequisites
FIXME
| Setup | Download files required for the lesson | |
| 00:00 | 1. Unix Basics |
What is UNIX and why do I need to know it?
How do I access Unix on my computer? What are most useful Unix commands? How do I work with streams and redirections? What is Unix pipe? How do I manage and interact with Unix processes? What is command substitution? What is Markdown? |
| 01:00 | 2. Unix Data Tools |
How do I download and check data?
How to inspect data? How to view data in Unix? How to obtain data summary information of my data? How do I select specific columns from my dataset? How do I find patterns in my data? How do I edit data streams? |
| 02:00 | 3. Shell Scripting, Writing Pipelines, and Parallelizing Tasks | How to write Bash scripts? |
| 04:00 | 4. Git for Scientists |
Why git is necessary in bioinformatics projects?
How to create git repositories, track files, stage and commit changes? How to collaborate with Git? How to work with past commits? |
| 06:00 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.